CRISPRone

CRISPRone report for GCA_003025345.2_ASM302534v2

♦ Seq 1: CP020560.1 Pseudomonas aeruginosa strain CR1 chromosome, complete genome

⇒Summary: seq-len = 6118054 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1074295-1074443 bp 2 Locus 2: 2729312-2739406 bp 3 Locus 3: 3712821-3715023 bp 4 Locus 4: 5788801-5789488 bp Zoom in on locus 1 x3 Zoom in on locus 2 x13 x13 Zoom in on locus 3 Zoom in on locus 4 x12 CRISPR array Location: 1074295-1074443 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1074295-1074443 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2729312-2730060 bp Num of repeats: 13 Spacers: s3-s14 CRISPR array Location: 2729312-2730060 bp Num of repeats: 13 Spacers: s3-s14 Gene: cd09739:cas6f Type: other Location: 2730233-2730796 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2730800-2731828 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 2731839-2732822 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2732809-2734113 bp Gene: COG1203:cas3 Type: Type-I Location: 2734171-2737407 bp Gene: cd09718:cas1 Type: universal Location: 2737404-2738378 bp CRISPR array Location: 2738659-2739406 bp Num of repeats: 13 Spacers: s15-s26 CRISPR array Location: 2738659-2739406 bp Num of repeats: 13 Spacers: s15-s26 Gene: COG2378:WYL Type: other Location: 3712821-3713792 bp Gene: unk Type: unknown Location: 3713902-3714588 bp Gene: cd09693:cas5 Type: Type-I Location: 3714616-3715023 bp CRISPR array Location: 5788801-5789488 bp Num of repeats: 12 Spacers: s27-s37 CRISPR array Location: 5788801-5789488 bp Num of repeats: 12 Spacers: s27-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1074295-1074443 bp]: array | spacers
           [Locus range 2729312-2730060 bp]: array | spacers
           [Locus range 2738659-2739406 bp]: array | spacers
           [Locus range 5788801-5789488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)