CRISPRone

CRISPRone report for GCA_003053445.1_ASM305344v1

♦ Seq 1: QAYT01000053.1 Pseudomonas aeruginosa strain KCJK8014 NODE_4_length_314650_cov_9.63574_ID_7, whole genome shotgun sequence

⇒Summary: seq-len = 314650 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96207-107145 bp Zoom in on locus 1 x9 x2 x17 CRISPR array Location: 96207-96724 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 96207-96724 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 96818-96908 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 96818-96908 bp Num of repeats: 2 Spacers: s9-s9 Gene: cd09641:cas3HD Type: Type-I Location: 97681-100362 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 100365-101933 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 101930-102460 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 102470-103612 bp Gene: pfam09704:cas5 Type: Type-I Location: 103614-103835 bp Gene: cd09693:cas5 Type: Type-I Location: 103887-104276 bp Gene: pfam08798:cas6e Type: other Location: 104251-104862 bp Gene: cd09719:cas1 Type: universal Location: 104889-105779 bp Gene: pfam09707:cas2 Type: universal Location: 105776-106075 bp CRISPR array Location: 106140-107145 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 106140-107145 bp Num of repeats: 17 Spacers: s10-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 96207-96724 bp]: array | spacers
           [Locus range 96818-96908 bp]: array | spacers
           [Locus range 106140-107145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QAYT01000049.1 Pseudomonas aeruginosa strain KCJK8014 NODE_11_length_216459_cov_11.683_ID_21, whole genome shotgun sequence

⇒Summary: seq-len = 216459 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96744-97565 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 96744-97565 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)