CRISPRone

CRISPRone report for GCA_003053465.1_ASM305346v1

♦ Seq 1: QAYU01000026.1 Pseudomonas aeruginosa strain KCJK8015 NODE_29_length_83398_cov_7.17471_ID_57, whole genome shotgun sequence

⇒Summary: seq-len = 83398 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15075-26012 bp Zoom in on locus 1 x17 x2 x9 CRISPR array Location: 15075-16079 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 15075-16079 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 16144-16443 bp Gene: cd09719:cas1 Type: universal Location: 16440-17330 bp Gene: pfam08798:cas6e Type: other Location: 17357-17896 bp Gene: cd09693:cas5 Type: Type-I Location: 17943-18371 bp Gene: pfam09704:cas5 Type: Type-I Location: 18384-18605 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 18607-19749 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 19759-20289 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 20286-21854 bp Gene: cd09641:cas3HD Type: Type-I Location: 21857-24538 bp CRISPR array Location: 25312-25401 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 25312-25401 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 25496-26012 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 25496-26012 bp Num of repeats: 9 Spacers: s18-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 15075-16079 bp]: array | spacers
           [Locus range 25312-25401 bp]: array | spacers
           [Locus range 25496-26012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QAYU01000041.1 Pseudomonas aeruginosa strain KCJK8015 NODE_9_length_211018_cov_9.08256_ID_17, whole genome shotgun sequence

⇒Summary: seq-len = 211018 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91301-92122 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 91301-92122 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)