CRISPRone

CRISPRone report for GCA_003053485.1_ASM305348v1

♦ Seq 1: QAYV01000105.1 Pseudomonas aeruginosa strain KCJK8016 NODE_2_length_209630_cov_5.08207_ID_3, whole genome shotgun sequence

⇒Summary: seq-len = 209630 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89915-90736 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 89915-90736 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QAYV01000196.1 Pseudomonas aeruginosa strain KCJK8016 NODE_36_length_59360_cov_4.13793_ID_71, whole genome shotgun sequence

⇒Summary: seq-len = 59360 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25144-36082 bp Zoom in on locus 1 x9 x2 x17 CRISPR array Location: 25144-25661 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 25144-25661 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 25755-25845 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 25755-25845 bp Num of repeats: 2 Spacers: s9-s9 Gene: cd09641:cas3HD Type: Type-I Location: 26618-29299 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 29302-30870 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 30867-31397 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 31407-32549 bp Gene: pfam09704:cas5 Type: Type-I Location: 32551-32772 bp Gene: cd09693:cas5 Type: Type-I Location: 32824-33213 bp Gene: pfam08798:cas6e Type: other Location: 33188-33799 bp Gene: cd09719:cas1 Type: universal Location: 33826-34716 bp Gene: pfam09707:cas2 Type: universal Location: 34713-35012 bp CRISPR array Location: 35077-36082 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 35077-36082 bp Num of repeats: 17 Spacers: s10-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25144-25661 bp]: array | spacers
           [Locus range 25755-25845 bp]: array | spacers
           [Locus range 35077-36082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)