CRISPRone

CRISPRone report for GCA_003055275.1_ASM305527v1

♦ Seq 1: QBEJ01000021.1 Pseudomonas aeruginosa strain HIAE_PA13 21c, whole genome shotgun sequence

⇒Summary: seq-len = 90280 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70802-79767 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 70802-71671 bp Gene: pfam13280:WYL Type: other Location: 76782-77684 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 77689-79767 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QBEJ01000027.1 Pseudomonas aeruginosa strain HIAE_PA13 27c, whole genome shotgun sequence

⇒Summary: seq-len = 75942 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36558-48317 bp Zoom in on locus 1 x13 x41 CRISPR array Location: 36558-37306 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36558-37306 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37489-38052 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38056-39084 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39095-40078 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40065-41369 bp Gene: COG1203:cas3 Type: Type-I Location: 41427-44657 bp Gene: cd09718:cas1 Type: universal Location: 44654-45628 bp CRISPR array Location: 45890-48317 bp Num of repeats: 41 Spacers: s13-s52 CRISPR array Location: 45890-48317 bp Num of repeats: 41 Spacers: s13-s52 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36558-37306 bp]: array | spacers
           [Locus range 45890-48317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)