CRISPRone

CRISPRone report for GCA_003055385.1_ASM305538v1

♦ Seq 1: QBEQ01000001.1 Pseudomonas aeruginosa strain HIAE_PA06 1c, whole genome shotgun sequence

⇒Summary: seq-len = 1288938 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 563520-573850 bp Zoom in on locus 1 x3 x16 CRISPR array Location: 563520-563672 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 563520-563672 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09641:cas3HD Type: Type-I Location: 564447-567128 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 567131-568699 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 568696-569226 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 569236-570378 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 570380-571042 bp Gene: pfam08798:cas6e Type: other Location: 571017-571628 bp Gene: cd09719:cas1 Type: universal Location: 571655-572545 bp Gene: pfam09707:cas2 Type: universal Location: 572542-572841 bp CRISPR array Location: 572906-573850 bp Num of repeats: 16 Spacers: s3-s17 CRISPR array Location: 572906-573850 bp Num of repeats: 16 Spacers: s3-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 563520-563672 bp]: array | spacers
           [Locus range 572906-573850 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QBEQ01000002.1 Pseudomonas aeruginosa strain HIAE_PA06 2c, whole genome shotgun sequence

⇒Summary: seq-len = 797117 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 380762-381690 bp Zoom in on locus 1 x16 CRISPR array Location: 380762-381690 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 380762-381690 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 380762-381690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)