CRISPRone

CRISPRone report for GCA_003055465.1_ASM305546v1

♦ Seq 1: QBEH01000016.1 Pseudomonas aeruginosa strain HIAE_PA15 16c, whole genome shotgun sequence

⇒Summary: seq-len = 91617 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28520-39187 bp Zoom in on locus 1 x19 x11 CRISPR array Location: 28520-29628 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 28520-29628 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 29888-30862 bp Gene: COG1203:cas3 Type: Type-I Location: 30859-34089 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34500-35801 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 35788-36771 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36782-37810 bp Gene: cd09739:cas6f Type: other Location: 37814-38377 bp CRISPR array Location: 38561-39187 bp Num of repeats: 11 Spacers: s19-s28 CRISPR array Location: 38561-39187 bp Num of repeats: 11 Spacers: s19-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28520-29628 bp]: array | spacers
           [Locus range 38561-39187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QBEH01000001.1 Pseudomonas aeruginosa strain HIAE_PA15 1c, whole genome shotgun sequence

⇒Summary: seq-len = 910390 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 611349-622613 bp Zoom in on locus 1 x13 x15 CRISPR array Location: 611349-612110 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 611349-612110 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 612885-615593 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 615955-617523 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 617520-618050 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 618060-619202 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 619204-619866 bp Gene: pfam08798:cas6e Type: other Location: 619841-620452 bp Gene: cd09719:cas1 Type: universal Location: 620479-621369 bp Gene: pfam09707:cas2 Type: universal Location: 621366-621665 bp CRISPR array Location: 621730-622613 bp Num of repeats: 15 Spacers: s13-s26 CRISPR array Location: 621730-622613 bp Num of repeats: 15 Spacers: s13-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 611349-612110 bp]: array | spacers
           [Locus range 621730-622613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)