CRISPRone

CRISPRone report for GCA_003055505.1_ASM305550v1

♦ Seq 1: QBEI01000001.1 Pseudomonas aeruginosa strain HIAE_PA14 1c, whole genome shotgun sequence

⇒Summary: seq-len = 1987036 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 394290-395098 bp 2 Locus 2: 1722355-1732493 bp Zoom in on locus 1 x14 Zoom in on locus 2 x11 x16 CRISPR array Location: 394290-395098 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 394290-395098 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1722355-1722983 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 1722355-1722983 bp Num of repeats: 11 Spacers: s14-s23 Gene: cd09739:cas6f Type: other Location: 1723166-1723729 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1723733-1724761 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1724772-1725755 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1725742-1727046 bp Gene: COG1203:cas3 Type: Type-I Location: 1727104-1730334 bp Gene: cd09718:cas1 Type: universal Location: 1730331-1731305 bp CRISPR array Location: 1731566-1732493 bp Num of repeats: 16 Spacers: s24-s38 CRISPR array Location: 1731566-1732493 bp Num of repeats: 16 Spacers: s24-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 394290-395098 bp]: array | spacers
           [Locus range 1722355-1722983 bp]: array | spacers
           [Locus range 1731566-1732493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QBEI01000006.1 Pseudomonas aeruginosa strain HIAE_PA14 6c, whole genome shotgun sequence

⇒Summary: seq-len = 318639 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142786-146579 bp Zoom in on locus 1 Gene: pfam09002:csx1 Type: Type-III Location: 142786-143262 bp Gene: pfam13280:WYL Type: other Location: 143651-144499 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 144501-146579 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)