CRISPRone

CRISPRone report for GCA_003055555.1_ASM305555v1

♦ Seq 1: QBEP01000022.1 Pseudomonas aeruginosa strain HIAE_PA07 22c, whole genome shotgun sequence

⇒Summary: seq-len = 102071 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34434-44668 bp Zoom in on locus 1 x16 x11 CRISPR array Location: 34434-35377 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 34434-35377 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 35442-35741 bp Gene: cd09719:cas1 Type: universal Location: 35738-36049 bp Gene: pfam08798:cas6e Type: other Location: 36076-36615 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 36662-37324 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 37326-38468 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 38478-39008 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 39005-40573 bp Gene: cd09641:cas3HD Type: Type-I Location: 40576-43257 bp CRISPR array Location: 44030-44668 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 44030-44668 bp Num of repeats: 11 Spacers: s16-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34434-35377 bp]: array | spacers
           [Locus range 44030-44668 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QBEP01000014.1 Pseudomonas aeruginosa strain HIAE_PA07 14c, whole genome shotgun sequence

⇒Summary: seq-len = 183472 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37552-47991 bp Zoom in on locus 1 x19 x13 CRISPR array Location: 37552-38660 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37552-38660 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 38843-39406 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39410-40438 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40449-41432 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41419-42723 bp Gene: COG1203:cas3 Type: Type-I Location: 42781-46011 bp Gene: cd09718:cas1 Type: universal Location: 46008-46982 bp CRISPR array Location: 47243-47991 bp Num of repeats: 13 Spacers: s19-s30 CRISPR array Location: 47243-47991 bp Num of repeats: 13 Spacers: s19-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37552-38660 bp]: array | spacers
           [Locus range 47243-47991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)