CRISPRone

CRISPRone report for GCA_003055585.1_ASM305558v1

♦ Seq 1: QBER01000019.1 Pseudomonas aeruginosa strain HIAE_PA05 19c, whole genome shotgun sequence

⇒Summary: seq-len = 114647 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61460-71898 bp Zoom in on locus 1 x18 x14 CRISPR array Location: 61460-62508 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 61460-62508 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 62691-63254 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 63258-64286 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 64297-65280 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 65267-66571 bp Gene: COG1203:cas3 Type: Type-I Location: 66629-68860 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 68824-69858 bp Gene: cd09718:cas1 Type: universal Location: 69855-70829 bp CRISPR array Location: 71090-71898 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 71090-71898 bp Num of repeats: 14 Spacers: s18-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 61460-62508 bp]: array | spacers
           [Locus range 71090-71898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QBER01000003.1 Pseudomonas aeruginosa strain HIAE_PA05 3c, whole genome shotgun sequence

⇒Summary: seq-len = 607476 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142562-152918 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 142562-143566 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 142562-143566 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 143631-143930 bp Gene: cd09719:cas1 Type: universal Location: 143927-144238 bp Gene: pfam08798:cas6e Type: other Location: 144265-144804 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 144851-145513 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 145515-146657 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 146667-147197 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 147194-148762 bp Gene: cd09641:cas3HD Type: Type-I Location: 148765-151446 bp CRISPR array Location: 152219-152918 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 152219-152918 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142562-143566 bp]: array | spacers
           [Locus range 152219-152918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)