CRISPRone

CRISPRone report for GCA_003095675.1_ASM309567v1

♦ Seq 1: CP029154.1 Clostridioides difficile strain CD161 chromosome, complete genome

⇒Summary: seq-len = 4295210 bp; # of CRISPR array = 7; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1366274-1366369 bp 2 Locus 2: 1578987-1579148 bp 3 Locus 3: 1688407-1689027 bp 4 Locus 4: 1779875-1782930 bp 5 Locus 5: 1924167-1924587 bp 6 Locus 6: 2662461-2673419 bp 7 Locus 7: 2724629-2734352 bp 8 Locus 8: 2814139-2814364 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 CRISPR array Location: 1366274-1366369 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1366274-1366369 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1578987-1579148 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1578987-1579148 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1688407-1689027 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1688407-1689027 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1779875-1780102 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1779875-1780102 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1782769-1782930 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1782769-1782930 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1924167-1924587 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 1924167-1924587 bp Num of repeats: 7 Spacers: s18-s23 Gene: cd06127:DEDDh Type: Type-I Location: 2662461-2662967 bp Gene: unk Type: unknown Location: 2663126-2663794 bp Gene: unk Type: unknown Location: 2664207-2664713 bp Gene: cd06127:DEDDh Type: Type-I Location: 2665085-2666122 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2672934-2673419 bp Gene: cd09641:cas3HD Type: Type-I Location: 2724629-2727037 bp Gene: cd09693:cas5 Type: Type-I Location: 2727064-2727861 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2727877-2728890 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2728910-2730376 bp Gene: pfam01881:cas6 Type: other Location: 2730381-2731118 bp Gene: unk Type: unknown Location: 2731432-2731890 bp Gene: cas14:cas14 Type: Type-V Location: 2731918-2733090 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2733243-2734352 bp CRISPR array Location: 2814139-2814364 bp Num of repeats: 4 Spacers: s24-s26 CRISPR array Location: 2814139-2814364 bp Num of repeats: 4 Spacers: s24-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1366274-1366369 bp]: array | spacers
           [Locus range 1578987-1579148 bp]: array | spacers
           [Locus range 1688407-1689027 bp]: array | spacers
           [Locus range 1779875-1780102 bp]: array | spacers
           [Locus range 1782769-1782930 bp]: array | spacers
           [Locus range 1924167-1924587 bp]: array | spacers
           [Locus range 2814139-2814364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)