CRISPRone

CRISPRone report for GCA_003095695.1_ASM309569v1

♦ Seq 1: CP029152.1 Clostridioides difficile strain CDT4 chromosome, complete genome

⇒Summary: seq-len = 4240954 bp; # of CRISPR array = 7; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1407123-1407218 bp 2 Locus 2: 1619834-1619995 bp 3 Locus 3: 1729254-1729874 bp 4 Locus 4: 1820723-1823778 bp 5 Locus 5: 1965007-1965427 bp 6 Locus 6: 2731347-2742303 bp 7 Locus 7: 2793512-2803235 bp 8 Locus 8: 2883022-2883247 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 CRISPR array Location: 1407123-1407218 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1407123-1407218 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1619834-1619995 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1619834-1619995 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1729254-1729874 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1729254-1729874 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1820723-1820950 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1820723-1820950 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1823617-1823778 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1823617-1823778 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1965007-1965427 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 1965007-1965427 bp Num of repeats: 7 Spacers: s18-s23 Gene: cd06127:DEDDh Type: Type-I Location: 2731347-2731853 bp Gene: unk Type: unknown Location: 2732012-2732680 bp Gene: unk Type: unknown Location: 2733092-2733598 bp Gene: cd06127:DEDDh Type: Type-I Location: 2733969-2735006 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2741818-2742303 bp Gene: cd09641:cas3HD Type: Type-I Location: 2793512-2795920 bp Gene: cd09693:cas5 Type: Type-I Location: 2795947-2796744 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2796760-2797773 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2797793-2799259 bp Gene: pfam01881:cas6 Type: other Location: 2799264-2800001 bp Gene: unk Type: unknown Location: 2800315-2800773 bp Gene: cas14:cas14 Type: Type-V Location: 2800801-2801973 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2802126-2803235 bp CRISPR array Location: 2883022-2883247 bp Num of repeats: 4 Spacers: s24-s26 CRISPR array Location: 2883022-2883247 bp Num of repeats: 4 Spacers: s24-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1407123-1407218 bp]: array | spacers
           [Locus range 1619834-1619995 bp]: array | spacers
           [Locus range 1729254-1729874 bp]: array | spacers
           [Locus range 1820723-1820950 bp]: array | spacers
           [Locus range 1823617-1823778 bp]: array | spacers
           [Locus range 1965007-1965427 bp]: array | spacers
           [Locus range 2883022-2883247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)