CRISPRone

CRISPRone report for GCA_003176695.1_ASM317669v1

♦ Seq 1: QGSM01000060.1 Pseudomonas sp. RW410 NODE_130_LENGTH_3535741_COV_56.464439, whole genome shotgun sequence

⇒Summary: seq-len = 3535839 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1919473-1929433 bp Zoom in on locus 1 x11 x13 CRISPR array Location: 1919473-1920101 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1919473-1920101 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1920361-1921335 bp Gene: COG1203:cas3 Type: Type-I Location: 1921332-1924562 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1924620-1925924 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1925911-1926894 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1926905-1927933 bp Gene: cd09739:cas6f Type: other Location: 1927937-1928500 bp CRISPR array Location: 1928685-1929433 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 1928685-1929433 bp Num of repeats: 13 Spacers: s11-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1919473-1920101 bp]: array | spacers
           [Locus range 1928685-1929433 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)