CRISPRone

CRISPRone report for GCA_003186395.1_ASM318639v1

♦ Seq 1: QHLR01004396.1 Pseudomonas aeruginosa strain LIM1303 NODE_4449_length_814_cov_4.997543, whole genome shotgun sequence

⇒Summary: seq-len = 904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17-913 bp Zoom in on locus 1 x14 CRISPR array Location: 17-913 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 17-913 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17-913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QHLR01004088.1 Pseudomonas aeruginosa strain LIM1303 NODE_4133_length_540_cov_3.750000, whole genome shotgun sequence

⇒Summary: seq-len = 630 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-640 bp Zoom in on locus 1 x10 CRISPR array Location: 14-640 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 14-640 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QHLR01003633.1 Pseudomonas aeruginosa strain LIM1303 NODE_3678_length_354_cov_5.483051, whole genome shotgun sequence

⇒Summary: seq-len = 444 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-441 bp Zoom in on locus 1 Gene: pfam05107:cas7b Type: Type-I Location: 1-441 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QHLR01004269.1 Pseudomonas aeruginosa strain LIM1303 NODE_4315_length_8656_cov_8.685074, whole genome shotgun sequence

⇒Summary: seq-len = 8746 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4965-8745 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 4965-7199 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 7250-7924 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 7921-8745 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QHLR01003416.1 Pseudomonas aeruginosa strain LIM1303 NODE_3450_length_2393_cov_5.739657, whole genome shotgun sequence

⇒Summary: seq-len = 2483 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-418 bp Zoom in on locus 1 x7 CRISPR array Location: 0-418 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-418 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QHLR01001982.1 Pseudomonas aeruginosa strain LIM1303 NODE_2009_length_2777_cov_8.468492, whole genome shotgun sequence

⇒Summary: seq-len = 2867 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2839 bp Zoom in on locus 1 x7 Gene: cd09689:cas7 Type: Subtype-I-C Location: 1-228 bp Gene: pfam01930:cas4 Type: Type-I Location: 247-879 bp Gene: cd09721:cas1 Type: universal Location: 883-1923 bp Gene: cd09725:cas2 Type: universal Location: 1933-2223 bp CRISPR array Location: 2405-2839 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2405-2839 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2405-2839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)