CRISPRone

CRISPRone report for GCA_003186445.1_ASM318644v1

♦ Seq 1: QHLU01003370.1 Pseudomonas aeruginosa strain LIM1410 NODE_3434_length_1537_cov_11.486012, whole genome shotgun sequence

⇒Summary: seq-len = 1627 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-1367 bp Zoom in on locus 1 x21 CRISPR array Location: 14-1367 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 14-1367 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-1367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QHLU01003408.1 Pseudomonas aeruginosa strain LIM1410 NODE_3476_length_12515_cov_17.604155, whole genome shotgun sequence

⇒Summary: seq-len = 12605 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4523 bp Zoom in on locus 1 Gene: cd09757:cas8c Type: Subtype-I-C Location: 2-1567 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 1564-2238 bp Gene: cd09641:cas3HD Type: Type-I Location: 2289-4523 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QHLU01003450.1 Pseudomonas aeruginosa strain LIM1410 NODE_3523_length_1435_cov_16.885017, whole genome shotgun sequence

⇒Summary: seq-len = 1525 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28-1522 bp Zoom in on locus 1 x4 CRISPR array Location: 28-261 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 28-261 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09725:cas2 Type: universal Location: 443-733 bp Gene: cd09634:cas1 Type: universal Location: 743-1522 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28-261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QHLU01003420.1 Pseudomonas aeruginosa strain LIM1410 NODE_3489_length_2065_cov_15.244552, whole genome shotgun sequence

⇒Summary: seq-len = 2155 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 269-2152 bp Zoom in on locus 1 Gene: cd09689:cas7 Type: Subtype-I-C Location: 269-1138 bp Gene: pfam01930:cas4 Type: Type-I Location: 1157-1789 bp Gene: cd09634:cas1 Type: universal Location: 1793-2152 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QHLU01003438.1 Pseudomonas aeruginosa strain LIM1410 NODE_3507_length_946_cov_7.312896, whole genome shotgun sequence

⇒Summary: seq-len = 1036 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1022 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1022 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1022 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1022 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)