CRISPRone

CRISPRone report for GCA_003186575.1_ASM318657v1

♦ Seq 1: QHLW01002855.1 Pseudomonas aeruginosa strain LIM1680 NODE_2906_length_4022_cov_11.242665, whole genome shotgun sequence

⇒Summary: seq-len = 4112 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4091 bp Zoom in on locus 1 x27 Gene: cd09689:cas7 Type: Subtype-I-C Location: 1-150 bp Gene: pfam01930:cas4 Type: Type-I Location: 169-801 bp Gene: cd09721:cas1 Type: universal Location: 805-1845 bp Gene: cd09725:cas2 Type: universal Location: 1855-2145 bp CRISPR array Location: 2327-4091 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 2327-4091 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2327-4091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QHLW01002787.1 Pseudomonas aeruginosa strain LIM1680 NODE_2835_length_8565_cov_12.448103, whole genome shotgun sequence

⇒Summary: seq-len = 8655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7948-8638 bp Zoom in on locus 1 x11 CRISPR array Location: 7948-8638 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 7948-8638 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7948-8638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QHLW01002812.1 Pseudomonas aeruginosa strain LIM1680 NODE_2862_length_10119_cov_13.258029, whole genome shotgun sequence

⇒Summary: seq-len = 10209 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4775-10207 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 4775-7009 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 7060-7734 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 7731-9524 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 9521-10207 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)