CRISPRone

CRISPRone report for GCA_003193645.1_ASM319364v1

♦ Seq 1: CP029660.1 Pseudomonas aeruginosa strain AR_0446 chromosome, complete genome

⇒Summary: seq-len = 6475581 bp; # of CRISPR array = 5; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 456541-457109 bp 2 Locus 2: 1592746-1602528 bp 3 Locus 3: 1983966-1984715 bp 4 Locus 4: 6265330-6266258 bp Zoom in on locus 1 x10 Zoom in on locus 2 x7 x14 Zoom in on locus 3 x13 Zoom in on locus 4 x16 CRISPR array Location: 456541-457109 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 456541-457109 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1592746-1593134 bp Num of repeats: 7 Spacers: s10-s15 CRISPR array Location: 1592746-1593134 bp Num of repeats: 7 Spacers: s10-s15 Gene: cd09739:cas6f Type: other Location: 1593317-1593880 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1593884-1594912 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1594923-1595906 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1595893-1597197 bp Gene: COG1203:cas3 Type: Type-I Location: 1597255-1600485 bp Gene: cd09718:cas1 Type: universal Location: 1600482-1601456 bp CRISPR array Location: 1601721-1602528 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 1601721-1602528 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 1983966-1984715 bp Num of repeats: 13 Spacers: s29-s40 CRISPR array Location: 1983966-1984715 bp Num of repeats: 13 Spacers: s29-s40 CRISPR array Location: 6265330-6266258 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 6265330-6266258 bp Num of repeats: 16 Spacers: s41-s55 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 456541-457109 bp]: array | spacers
           [Locus range 1592746-1593134 bp]: array | spacers
           [Locus range 1601721-1602528 bp]: array | spacers
           [Locus range 1983966-1984715 bp]: array | spacers
           [Locus range 6265330-6266258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)