CRISPRone

CRISPRone report for GCA_003206535.1_ASM320653v1

♦ Seq 1: CP029707.1 Pseudomonas aeruginosa strain K34-7 chromosome, complete genome

⇒Summary: seq-len = 7038012 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103426-104354 bp 2 Locus 2: 1655034-1666612 bp 3 Locus 3: 5207933-5216194 bp Zoom in on locus 1 x16 Zoom in on locus 2 x23 x28 Zoom in on locus 3 CRISPR array Location: 103426-104354 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 103426-104354 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1655034-1656379 bp Num of repeats: 23 Spacers: s16-s37 CRISPR array Location: 1655034-1656379 bp Num of repeats: 23 Spacers: s16-s37 Gene: cd09739:cas6f Type: other Location: 1656563-1657126 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1657130-1658158 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1658169-1659152 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1659139-1660443 bp Gene: COG1203:cas3 Type: Type-I Location: 1660501-1663731 bp Gene: cd09718:cas1 Type: universal Location: 1663728-1664702 bp CRISPR array Location: 1664964-1666612 bp Num of repeats: 28 Spacers: s38-s64 CRISPR array Location: 1664964-1666612 bp Num of repeats: 28 Spacers: s38-s64 Gene: COG1199:DinG Type: Subtype-IV-A Location: 5207933-5210299 bp Gene: unk Type: unknown Location: 5210692-5211270 bp Gene: unk Type: unknown Location: 5211414-5211569 bp Gene: COG2378:WYL Type: other Location: 5211823-5212665 bp Gene: pfam13280:WYL Type: other Location: 5213407-5214423 bp Gene: mkCas0115:csx3 Type: other Location: 5214584-5216194 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 103426-104354 bp]: array | spacers
           [Locus range 1655034-1656379 bp]: array | spacers
           [Locus range 1664964-1666612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)