CRISPRone

CRISPRone report for GCA_003267915.1_ASM326791v1

♦ Seq 1: LSFH01000146.1 Pseudomonas aeruginosa strain PA130788 contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 71854 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56887-63278 bp Zoom in on locus 1 x11 Gene: pfam03787:csm3gr7 Type: Type-III Location: 56887-57987 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 57975-58529 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 58543-60756 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 60756-61436 bp Gene: COG1518:cas1 Type: universal Location: 61441-62310 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 62291-62626 bp CRISPR array Location: 62650-63278 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62650-63278 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 62650-63278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSFH01000002.1 Pseudomonas aeruginosa strain PA130788 contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 229065 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181295-192514 bp Zoom in on locus 1 x26 x19 CRISPR array Location: 181295-182823 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 181295-182823 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 183084-184058 bp Gene: COG1203:cas3 Type: Type-I Location: 184055-187285 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 187343-188647 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 188634-189617 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 189628-190656 bp Gene: cd09739:cas6f Type: other Location: 190660-191223 bp CRISPR array Location: 191407-192514 bp Num of repeats: 19 Spacers: s26-s43 CRISPR array Location: 191407-192514 bp Num of repeats: 19 Spacers: s26-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 181295-182823 bp]: array | spacers
           [Locus range 191407-192514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)