CRISPRone

CRISPRone report for GCA_003313545.1_ASM331354v1

♦ Seq 1: CP011846.1 Clostridioides difficile strain DSM 27638 chromosome, complete genome

⇒Summary: seq-len = 4229698 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1302411-1303369 bp 2 Locus 2: 1511756-1512443 bp 3 Locus 3: 1588390-1592403 bp 4 Locus 4: 1623127-1623421 bp 5 Locus 5: 1715804-1718315 bp 6 Locus 6: 1855589-1856413 bp 7 Locus 7: 2164191-2164285 bp 8 Locus 8: 2205906-2206531 bp 9 Locus 9: 2666781-2674656 bp 10 Locus 10: 3250196-3261378 bp 11 Locus 11: 3497201-3503733 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1302411-1303369 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1302411-1303369 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1511756-1512443 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1511756-1512443 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1588390-1588989 bp Gene: unk Type: unknown Location: 1589157-1589624 bp Gene: COG2378:WYL Type: other Location: 1589729-1590646 bp Gene: cas14:cas14 Type: Type-V Location: 1591285-1592403 bp CRISPR array Location: 1623127-1623421 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1623127-1623421 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1715804-1716161 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1715804-1716161 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1718025-1718315 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1718025-1718315 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1855589-1856413 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1855589-1856413 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2164191-2164285 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2164191-2164285 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2205906-2206531 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2205906-2206531 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2666781-2669189 bp Gene: cd09693:cas5 Type: Type-I Location: 2669216-2670022 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2670038-2671051 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2671071-2672546 bp Gene: pfam01881:cas6 Type: other Location: 2672551-2673288 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2673547-2674656 bp CRISPR array Location: 3250196-3251813 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3250196-3251813 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3251042-3251275 bp Gene: unk Type: unknown Location: 3251497-3251664 bp Gene: cd09725:cas2 Type: universal Location: 3251997-3252263 bp Gene: cd09722:cas1 Type: universal Location: 3252266-3253246 bp Gene: pfam01930:cas4 Type: Type-I Location: 3253249-3253767 bp Gene: COG1203:cas3 Type: Type-I Location: 3253815-3256136 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3256147-3256848 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3256850-3257764 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3257766-3259643 bp Gene: pfam01881:cas6 Type: other Location: 3259649-3260443 bp Gene: pfam13280:WYL Type: other Location: 3260464-3261378 bp CRISPR array Location: 3497201-3497823 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3497201-3497823 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3498076-3500061 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3500072-3501142 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3501163-3502329 bp Gene: pfam01881:cas6 Type: other Location: 3502331-3503095 bp Gene: cd09693:cas5 Type: Type-I Location: 3503086-3503733 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1302411-1303369 bp]: array | spacers
           [Locus range 1511756-1512443 bp]: array | spacers
           [Locus range 1623127-1623421 bp]: array | spacers
           [Locus range 1715804-1716161 bp]: array | spacers
           [Locus range 1718025-1718315 bp]: array | spacers
           [Locus range 1855589-1856413 bp]: array | spacers
           [Locus range 2164191-2164285 bp]: array | spacers
           [Locus range 2205906-2206531 bp]: array | spacers
           [Locus range 3250196-3251813 bp]: array | spacers
           [Locus range 3497201-3497823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)