CRISPRone

CRISPRone report for GCA_003313565.1_ASM331356v1

♦ Seq 1: CP011847.1 Clostridioides difficile strain DSM 27639 chromosome, complete genome

⇒Summary: seq-len = 4263997 bp; # of CRISPR array = 12; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1323996-1325140 bp 2 Locus 2: 1534734-1535493 bp 3 Locus 3: 1661980-1662536 bp 4 Locus 4: 1841161-1842310 bp 5 Locus 5: 2158849-2159009 bp 6 Locus 6: 2540922-2541808 bp 7 Locus 7: 2703789-2712135 bp 8 Locus 8: 2785418-2785975 bp 9 Locus 9: 3311424-3316960 bp 10 Locus 10: 3375939-3386913 bp 11 Locus 11: 3601484-3601577 bp Zoom in on locus 1 x18 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x18 Zoom in on locus 5 x3 Zoom in on locus 6 x14 Zoom in on locus 7 Zoom in on locus 8 x9 Zoom in on locus 9 x10 x7 x16 Zoom in on locus 10 x22 Zoom in on locus 11 x2 CRISPR array Location: 1323996-1325140 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1323996-1325140 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1534734-1535493 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 1534734-1535493 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 1661980-1662536 bp Num of repeats: 9 Spacers: s29-s36 CRISPR array Location: 1661980-1662536 bp Num of repeats: 9 Spacers: s29-s36 CRISPR array Location: 1841161-1842310 bp Num of repeats: 18 Spacers: s37-s53 CRISPR array Location: 1841161-1842310 bp Num of repeats: 18 Spacers: s37-s53 CRISPR array Location: 2158849-2159009 bp Num of repeats: 3 Spacers: s54-s55 CRISPR array Location: 2158849-2159009 bp Num of repeats: 3 Spacers: s54-s55 CRISPR array Location: 2540922-2541808 bp Num of repeats: 14 Spacers: s56-s68 CRISPR array Location: 2540922-2541808 bp Num of repeats: 14 Spacers: s56-s68 Gene: cd09641:cas3HD Type: Type-I Location: 2703789-2706197 bp Gene: cd09693:cas5 Type: Type-I Location: 2706224-2707021 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2707037-2708053 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2708073-2709548 bp Gene: pfam01881:cas6 Type: other Location: 2709553-2710290 bp Gene: unk Type: unknown Location: 2710391-2710567 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2711026-2712135 bp CRISPR array Location: 2785418-2785975 bp Num of repeats: 9 Spacers: s69-s76 CRISPR array Location: 2785418-2785975 bp Num of repeats: 9 Spacers: s69-s76 CRISPR array Location: 3311424-3312043 bp Num of repeats: 10 Spacers: s77-s85 CRISPR array Location: 3311424-3312043 bp Num of repeats: 10 Spacers: s77-s85 CRISPR array Location: 3313746-3314171 bp Num of repeats: 7 Spacers: s86-s91 CRISPR array Location: 3313746-3314171 bp Num of repeats: 7 Spacers: s86-s91 CRISPR array Location: 3315940-3316960 bp Num of repeats: 16 Spacers: s92-s106 CRISPR array Location: 3315940-3316960 bp Num of repeats: 16 Spacers: s92-s106 CRISPR array Location: 3375939-3377348 bp Num of repeats: 22 Spacers: s107-s127 CRISPR array Location: 3375939-3377348 bp Num of repeats: 22 Spacers: s107-s127 Gene: cd09725:cas2 Type: universal Location: 3377532-3377798 bp Gene: cd09722:cas1 Type: universal Location: 3377801-3378781 bp Gene: pfam01930:cas4 Type: Type-I Location: 3378784-3379302 bp Gene: COG1203:cas3 Type: Type-I Location: 3379350-3381671 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3381682-3382383 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3382385-3383299 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3383301-3385178 bp Gene: pfam01881:cas6 Type: other Location: 3385184-3385978 bp Gene: pfam13280:WYL Type: other Location: 3385999-3386913 bp CRISPR array Location: 3601484-3601577 bp Num of repeats: 2 Spacers: s128-s128 CRISPR array Location: 3601484-3601577 bp Num of repeats: 2 Spacers: s128-s128 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1323996-1325140 bp]: array | spacers
           [Locus range 1534734-1535493 bp]: array | spacers
           [Locus range 1661980-1662536 bp]: array | spacers
           [Locus range 1841161-1842310 bp]: array | spacers
           [Locus range 2158849-2159009 bp]: array | spacers
           [Locus range 2540922-2541808 bp]: array | spacers
           [Locus range 2785418-2785975 bp]: array | spacers
           [Locus range 3311424-3312043 bp]: array | spacers
           [Locus range 3313746-3314171 bp]: array | spacers
           [Locus range 3315940-3316960 bp]: array | spacers
           [Locus range 3375939-3377348 bp]: array | spacers
           [Locus range 3601484-3601577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)