CRISPRone

CRISPRone report for GCA_003313585.1_ASM331358v1

♦ Seq 1: CP011848.1 Clostridioides difficile strain DSM 27640 chromosome, complete genome

⇒Summary: seq-len = 4229629 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1302343-1303301 bp 2 Locus 2: 1511689-1512376 bp 3 Locus 3: 1588323-1592336 bp 4 Locus 4: 1623060-1623354 bp 5 Locus 5: 1715737-1718248 bp 6 Locus 6: 1855522-1856346 bp 7 Locus 7: 2164123-2164217 bp 8 Locus 8: 2205838-2206463 bp 9 Locus 9: 2666713-2674588 bp 10 Locus 10: 3250127-3261309 bp 11 Locus 11: 3497132-3503664 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1302343-1303301 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1302343-1303301 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1511689-1512376 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1511689-1512376 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1588323-1588922 bp Gene: unk Type: unknown Location: 1589090-1589557 bp Gene: COG2378:WYL Type: other Location: 1589662-1590579 bp Gene: cas14:cas14 Type: Type-V Location: 1591218-1592336 bp CRISPR array Location: 1623060-1623354 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1623060-1623354 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1715737-1716094 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1715737-1716094 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1717958-1718248 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1717958-1718248 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1855522-1856346 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1855522-1856346 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2164123-2164217 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2164123-2164217 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2205838-2206463 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2205838-2206463 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2666713-2669121 bp Gene: cd09693:cas5 Type: Type-I Location: 2669148-2669954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2669970-2670983 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2671003-2672478 bp Gene: pfam01881:cas6 Type: other Location: 2672483-2673220 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2673479-2674588 bp CRISPR array Location: 3250127-3251744 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3250127-3251744 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3250973-3251206 bp Gene: unk Type: unknown Location: 3251428-3251595 bp Gene: cd09725:cas2 Type: universal Location: 3251928-3252194 bp Gene: cd09722:cas1 Type: universal Location: 3252197-3253177 bp Gene: pfam01930:cas4 Type: Type-I Location: 3253180-3253698 bp Gene: COG1203:cas3 Type: Type-I Location: 3253746-3256067 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3256078-3256779 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3256781-3257695 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3257697-3259574 bp Gene: pfam01881:cas6 Type: other Location: 3259580-3260374 bp Gene: pfam13280:WYL Type: other Location: 3260395-3261309 bp CRISPR array Location: 3497132-3497754 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3497132-3497754 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3498007-3499992 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3500003-3501073 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3501094-3502260 bp Gene: pfam01881:cas6 Type: other Location: 3502262-3503026 bp Gene: cd09693:cas5 Type: Type-I Location: 3503017-3503664 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1302343-1303301 bp]: array | spacers
           [Locus range 1511689-1512376 bp]: array | spacers
           [Locus range 1623060-1623354 bp]: array | spacers
           [Locus range 1715737-1716094 bp]: array | spacers
           [Locus range 1717958-1718248 bp]: array | spacers
           [Locus range 1855522-1856346 bp]: array | spacers
           [Locus range 2164123-2164217 bp]: array | spacers
           [Locus range 2205838-2206463 bp]: array | spacers
           [Locus range 3250127-3251744 bp]: array | spacers
           [Locus range 3497132-3497754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)