CRISPRone

CRISPRone report for GCA_003321505.1_ASM332150v1

♦ Seq 1: PUQE01000038.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_121, whole genome shotgun sequence

⇒Summary: seq-len = 48436 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37369-48099 bp Zoom in on locus 1 x7 x24 CRISPR array Location: 37369-37757 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 37369-37757 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 37941-38504 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38508-39536 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39547-40530 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40517-41818 bp Gene: COG1203:cas3 Type: Type-I Location: 42229-45459 bp Gene: cd09718:cas1 Type: universal Location: 45456-46430 bp CRISPR array Location: 46691-48099 bp Num of repeats: 24 Spacers: s7-s29 CRISPR array Location: 46691-48099 bp Num of repeats: 24 Spacers: s7-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37369-37757 bp]: array | spacers
           [Locus range 46691-48099 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PUQE01000016.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_99, whole genome shotgun sequence

⇒Summary: seq-len = 148159 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135169-144636 bp Zoom in on locus 1 x26 Gene: cd09641:cas3HD Type: Type-I Location: 135169-137403 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 137454-138128 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 138125-139888 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 139900-140769 bp Gene: pfam01930:cas4 Type: Type-I Location: 140788-141420 bp Gene: cd09721:cas1 Type: universal Location: 141424-142464 bp Gene: cd09725:cas2 Type: universal Location: 142474-142764 bp CRISPR array Location: 142946-144636 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 142946-144636 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142946-144636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PUQE01000009.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_92, whole genome shotgun sequence

⇒Summary: seq-len = 208881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 339-1326 bp Zoom in on locus 1 x17 CRISPR array Location: 339-1326 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 339-1326 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 339-1326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)