CRISPRone

CRISPRone report for GCA_003324025.1_ASM332402v1

♦ Seq 1: KZ848310.1 Clostridioides difficile strain GZ8 genomic scaffold Scaffold3, whole genome shotgun sequence

⇒Summary: seq-len = 238577 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91596-102576 bp 2 Locus 2: 153786-163509 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 91596-92102 bp Gene: unk Type: unknown Location: 92261-92929 bp Gene: unk Type: unknown Location: 93364-93870 bp Gene: cd06127:DEDDh Type: Type-I Location: 94242-95279 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 102091-102576 bp Gene: cd09641:cas3HD Type: Type-I Location: 153786-156194 bp Gene: cd09693:cas5 Type: Type-I Location: 156221-157018 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157034-158047 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158067-159533 bp Gene: pfam01881:cas6 Type: other Location: 159538-160275 bp Gene: unk Type: unknown Location: 160589-161047 bp Gene: cas14:cas14 Type: Type-V Location: 161075-162247 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 162400-163509 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QOVP01000208.1 Clostridioides difficile strain GZ8 Scaffold52_1, whole genome shotgun sequence

⇒Summary: seq-len = 6634 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1630-1856 bp Zoom in on locus 1 x4 CRISPR array Location: 1630-1856 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1630-1856 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1630-1856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QOVP01000179.1 Clostridioides difficile strain GZ8 Scaffold35_1, whole genome shotgun sequence

⇒Summary: seq-len = 34709 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5852-6012 bp Zoom in on locus 1 x3 CRISPR array Location: 5852-6012 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5852-6012 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5852-6012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QOVP01000213.1 Clostridioides difficile strain GZ8 Scaffold57_1, whole genome shotgun sequence

⇒Summary: seq-len = 4566 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1831-1926 bp Zoom in on locus 1 x2 CRISPR array Location: 1831-1926 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1831-1926 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1831-1926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: KZ848313.1 Clostridioides difficile strain GZ8 genomic scaffold Scaffold6, whole genome shotgun sequence

⇒Summary: seq-len = 203020 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101456-102076 bp 2 Locus 2: 192877-195932 bp Zoom in on locus 1 x10 Zoom in on locus 2 x4 x3 CRISPR array Location: 101456-102076 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 101456-102076 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 192877-193104 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 192877-193104 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 195771-195932 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 195771-195932 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 101456-102076 bp]: array | spacers
           [Locus range 192877-193104 bp]: array | spacers
           [Locus range 195771-195932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: KZ848311.1 Clostridioides difficile strain GZ8 genomic scaffold Scaffold4, whole genome shotgun sequence

⇒Summary: seq-len = 219254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164485-164904 bp Zoom in on locus 1 x7 CRISPR array Location: 164485-164904 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164485-164904 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164485-164904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)