CRISPRone

CRISPRone report for GCA_003324035.1_ASM332403v1

♦ Seq 1: QOVO01000001.1 Clostridioides difficile strain 4 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 773275 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97974-98200 bp 2 Locus 2: 177986-187709 bp 3 Locus 3: 238919-249877 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97974-98200 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97974-98200 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177986-179095 bp Gene: cas14:cas14 Type: Type-V Location: 179248-180420 bp Gene: unk Type: unknown Location: 180448-180906 bp Gene: pfam01881:cas6 Type: other Location: 181220-181957 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181962-183428 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183448-184461 bp Gene: cd09693:cas5 Type: Type-I Location: 184477-185274 bp Gene: cd09641:cas3HD Type: Type-I Location: 185301-187709 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238919-239404 bp Gene: cd06127:DEDDh Type: Type-I Location: 246207-247253 bp Gene: unk Type: unknown Location: 247625-248131 bp Gene: unk Type: unknown Location: 248544-249212 bp Gene: cd06127:DEDDh Type: Type-I Location: 249371-249877 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97974-98200 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QOVO01000003.1 Clostridioides difficile strain 4 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 376627 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194147-194242 bp Zoom in on locus 1 x2 CRISPR array Location: 194147-194242 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194147-194242 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194147-194242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QOVO01000002.1 Clostridioides difficile strain 4 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 529097 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164238-164657 bp 2 Locus 2: 296047-299101 bp 3 Locus 3: 389951-390570 bp 4 Locus 4: 499830-499990 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 164238-164657 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164238-164657 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 296047-296207 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 296047-296207 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 298875-299101 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 298875-299101 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 389951-390570 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 389951-390570 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 499830-499990 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 499830-499990 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164238-164657 bp]: array | spacers
           [Locus range 296047-296207 bp]: array | spacers
           [Locus range 298875-299101 bp]: array | spacers
           [Locus range 389951-390570 bp]: array | spacers
           [Locus range 499830-499990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)