CRISPRone

CRISPRone report for GCA_003325515.1_ASM332551v1

♦ Seq 1: QORD01000185.1 Pseudomonas aeruginosa strain G1-402 HC_402109_S35_R1_001_contig_254, whole genome shotgun sequence

⇒Summary: seq-len = 2461 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1108-2456 bp Zoom in on locus 1 x23 CRISPR array Location: 1108-2456 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1108-2456 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1108-2456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QORD01000111.1 Pseudomonas aeruginosa strain G1-402 HC_402109_S35_R1_001_contig_204, whole genome shotgun sequence

⇒Summary: seq-len = 3524 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-688 bp Zoom in on locus 1 x12 CRISPR array Location: 1-688 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1-688 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QORD01000360.1 Pseudomonas aeruginosa strain G1-402 HC_402109_S35_R1_001_contig_176, whole genome shotgun sequence

⇒Summary: seq-len = 8931 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39-8918 bp Zoom in on locus 1 x2 x4 CRISPR array Location: 39-127 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 39-127 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 310-873 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 877-1905 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1916-2899 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2886-4190 bp Gene: COG1203:cas3 Type: Type-I Location: 4248-7478 bp Gene: cd09718:cas1 Type: universal Location: 7475-8449 bp CRISPR array Location: 8711-8918 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 8711-8918 bp Num of repeats: 4 Spacers: s2-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39-127 bp]: array | spacers
           [Locus range 8711-8918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QORD01000004.1 Pseudomonas aeruginosa strain G1-402 HC_402109_S35_R1_001_contig_70, whole genome shotgun sequence

⇒Summary: seq-len = 129401 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82376-87848 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 82376-84550 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 84639-85364 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 85393-86148 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 86148-87191 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 87198-87848 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QORD01000167.1 Pseudomonas aeruginosa strain G1-402 HC_402109_S35_R1_001_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 92414 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5451-14906 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 5451-6527 bp Gene: pfam13280:WYL Type: other Location: 8891-9766 bp Gene: unk Type: unknown Location: 9896-11476 bp Gene: unk Type: unknown Location: 11500-12147 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 12540-14906 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)