CRISPRone

CRISPRone report for GCA_003325715.1_ASM332571v1

♦ Seq 1: QORC01000197.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_90, whole genome shotgun sequence

⇒Summary: seq-len = 12360 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-9532 bp Zoom in on locus 1 x3 x14 CRISPR array Location: 0-141 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-141 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 402-1376 bp Gene: COG1203:cas3 Type: Type-I Location: 1373-4603 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4661-5965 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5952-6935 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6946-7974 bp Gene: cd09739:cas6f Type: other Location: 7978-8541 bp CRISPR array Location: 8725-9532 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 8725-9532 bp Num of repeats: 14 Spacers: s3-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-141 bp]: array | spacers
           [Locus range 8725-9532 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QORC01000173.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_64, whole genome shotgun sequence

⇒Summary: seq-len = 811 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-740 bp Zoom in on locus 1 x13 CRISPR array Location: 0-740 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 0-740 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QORC01000380.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_46, whole genome shotgun sequence

⇒Summary: seq-len = 129456 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 818-6290 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 818-1468 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 1475-2518 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 2518-3273 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 3302-4027 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 4116-6290 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QORC01000407.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_110, whole genome shotgun sequence

⇒Summary: seq-len = 1944 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-618 bp Zoom in on locus 1 x11 CRISPR array Location: 0-618 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-618 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QORC01000259.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 92434 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5450-14905 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 5450-6526 bp Gene: pfam13280:WYL Type: other Location: 8890-9765 bp Gene: unk Type: unknown Location: 9895-11475 bp Gene: unk Type: unknown Location: 11499-12146 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 12539-14905 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)