CRISPRone

CRISPRone report for GCA_003326915.1_ASM332691v1

♦ Seq 1: QNWK01000006.1 Clostridioides difficile strain 38 Scaffold5_1, whole genome shotgun sequence

⇒Summary: seq-len = 230033 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29116-29277 bp 2 Locus 2: 138536-139156 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 CRISPR array Location: 29116-29277 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29116-29277 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138536-139156 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138536-139156 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29116-29277 bp]: array | spacers
           [Locus range 138536-139156 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWK01000007.1 Clostridioides difficile strain 38 Scaffold6_1, whole genome shotgun sequence

⇒Summary: seq-len = 218967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164246-164665 bp Zoom in on locus 1 x7 CRISPR array Location: 164246-164665 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164246-164665 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164246-164665 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWK01000001.1 Clostridioides difficile strain 38 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 634118 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 384254-395212 bp 2 Locus 2: 446422-456145 bp 3 Locus 3: 535912-536137 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 384254-384760 bp Gene: unk Type: unknown Location: 384919-385587 bp Gene: unk Type: unknown Location: 386000-386506 bp Gene: cd06127:DEDDh Type: Type-I Location: 386878-387915 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 394727-395212 bp Gene: cd09641:cas3HD Type: Type-I Location: 446422-448830 bp Gene: cd09693:cas5 Type: Type-I Location: 448857-449654 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 449670-450683 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 450703-452169 bp Gene: pfam01881:cas6 Type: other Location: 452174-452911 bp Gene: unk Type: unknown Location: 453225-453683 bp Gene: cas14:cas14 Type: Type-V Location: 453711-454883 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 455036-456145 bp CRISPR array Location: 535912-536137 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 535912-536137 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 535912-536137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWK01000002.1 Clostridioides difficile strain 38 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 376589 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194101-194196 bp Zoom in on locus 1 x2 CRISPR array Location: 194101-194196 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194101-194196 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194101-194196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWK01000040.1 Clostridioides difficile strain 38 Scaffold38_1, whole genome shotgun sequence

⇒Summary: seq-len = 15109 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2925 bp Zoom in on locus 1 x2 x3 CRISPR array Location: 1-97 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-97 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2764-2925 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 2764-2925 bp Num of repeats: 3 Spacers: s2-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-97 bp]: array | spacers
           [Locus range 2764-2925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)