CRISPRone

CRISPRone report for GCA_003326935.1_ASM332693v1

♦ Seq 1: QNWL01000015.1 Clostridioides difficile strain 50 Scaffold14_1, whole genome shotgun sequence

⇒Summary: seq-len = 135519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29124-29285 bp Zoom in on locus 1 x3 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29124-29285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWL01000005.1 Clostridioides difficile strain 50 Scaffold4_1, whole genome shotgun sequence

⇒Summary: seq-len = 218975 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164254-164673 bp Zoom in on locus 1 x7 CRISPR array Location: 164254-164673 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164254-164673 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164254-164673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWL01000030.1 Clostridioides difficile strain 50 Scaffold29_1, whole genome shotgun sequence

⇒Summary: seq-len = 46356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3004-3624 bp Zoom in on locus 1 x10 CRISPR array Location: 3004-3624 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3004-3624 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3004-3624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWL01000001.1 Clostridioides difficile strain 50 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 388530 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97990-98347 bp 2 Locus 2: 178133-187856 bp 3 Locus 3: 239066-250024 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97990-98347 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97990-98347 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178133-179242 bp Gene: cas14:cas14 Type: Type-V Location: 179395-180567 bp Gene: unk Type: unknown Location: 180595-181053 bp Gene: pfam01881:cas6 Type: other Location: 181367-182104 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182109-183575 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183595-184608 bp Gene: cd09693:cas5 Type: Type-I Location: 184624-185421 bp Gene: cd09641:cas3HD Type: Type-I Location: 185448-187856 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239066-239551 bp Gene: cd06127:DEDDh Type: Type-I Location: 246354-247400 bp Gene: unk Type: unknown Location: 247772-248278 bp Gene: unk Type: unknown Location: 248691-249359 bp Gene: cd06127:DEDDh Type: Type-I Location: 249518-250024 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97990-98347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)