CRISPRone

CRISPRone report for GCA_003326985.1_ASM332698v1

♦ Seq 1: QNWO01000001.1 Clostridioides difficile strain 7 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 369402 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183294-183388 bp Zoom in on locus 1 x2 CRISPR array Location: 183294-183388 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 183294-183388 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 183294-183388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWO01000018.1 Clostridioides difficile strain 7 Scaffold15_1, whole genome shotgun sequence

⇒Summary: seq-len = 116026 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-357 bp Zoom in on locus 1 x6 CRISPR array Location: 1-357 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1-357 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-357 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWO01000002.1 Clostridioides difficile strain 7 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 345370 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95452-106410 bp 2 Locus 2: 157620-167343 bp 3 Locus 3: 247130-247421 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x5 Gene: cd06127:DEDDh Type: Type-I Location: 95452-95958 bp Gene: unk Type: unknown Location: 96117-96785 bp Gene: unk Type: unknown Location: 97198-97704 bp Gene: cd06127:DEDDh Type: Type-I Location: 98076-99113 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105925-106410 bp Gene: cd09641:cas3HD Type: Type-I Location: 157620-160028 bp Gene: cd09693:cas5 Type: Type-I Location: 160055-160852 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160868-161881 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161901-163367 bp Gene: pfam01881:cas6 Type: other Location: 163372-164109 bp Gene: unk Type: unknown Location: 164423-164881 bp Gene: cas14:cas14 Type: Type-V Location: 164909-166081 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166234-167343 bp CRISPR array Location: 247130-247421 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 247130-247421 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247130-247421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWO01000017.1 Clostridioides difficile strain 7 Scaffold14_1, whole genome shotgun sequence

⇒Summary: seq-len = 121263 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91984-92144 bp Zoom in on locus 1 x3 CRISPR array Location: 91984-92144 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91984-92144 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91984-92144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWO01000009.1 Clostridioides difficile strain 7 Scaffold7_1, whole genome shotgun sequence

⇒Summary: seq-len = 220515 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55867-56228 bp Zoom in on locus 1 x6 CRISPR array Location: 55867-56228 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 55867-56228 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55867-56228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)