CRISPRone

CRISPRone report for GCA_003327025.1_ASM332702v1

♦ Seq 1: QNWS01000002.1 Clostridioides difficile strain GZ6 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 376643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182395-182489 bp Zoom in on locus 1 x2 CRISPR array Location: 182395-182489 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182395-182489 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182395-182489 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWS01000001.1 Clostridioides difficile strain GZ6 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 751810 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79882-89605 bp 2 Locus 2: 140815-151773 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 79882-80991 bp Gene: cas14:cas14 Type: Type-V Location: 81144-82316 bp Gene: unk Type: unknown Location: 82344-82802 bp Gene: pfam01881:cas6 Type: other Location: 83116-83853 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 83858-85324 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 85344-86357 bp Gene: cd09693:cas5 Type: Type-I Location: 86373-87170 bp Gene: cd09641:cas3HD Type: Type-I Location: 87197-89605 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 140815-141300 bp Gene: cd06127:DEDDh Type: Type-I Location: 148103-149149 bp Gene: unk Type: unknown Location: 149521-150027 bp Gene: unk Type: unknown Location: 150440-151108 bp Gene: cd06127:DEDDh Type: Type-I Location: 151267-151773 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWS01000005.1 Clostridioides difficile strain GZ6 Scaffold4_1, whole genome shotgun sequence

⇒Summary: seq-len = 245244 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12186-15240 bp 2 Locus 2: 106090-106709 bp 3 Locus 3: 215969-216129 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 12186-12346 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12186-12346 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 15014-15240 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 15014-15240 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 106090-106709 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 106090-106709 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215969-216129 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215969-216129 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12186-12346 bp]: array | spacers
           [Locus range 15014-15240 bp]: array | spacers
           [Locus range 106090-106709 bp]: array | spacers
           [Locus range 215969-216129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWS01000006.1 Clostridioides difficile strain GZ6 Scaffold5_1, whole genome shotgun sequence

⇒Summary: seq-len = 218967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54303-54723 bp Zoom in on locus 1 x7 CRISPR array Location: 54303-54723 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 54303-54723 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54303-54723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)