CRISPRone

CRISPRone report for GCA_003327055.1_ASM332705v1

♦ Seq 1: QNWQ01000016.1 Clostridioides difficile strain GZ13 Scaffold15_1, whole genome shotgun sequence

⇒Summary: seq-len = 135739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106456-106616 bp Zoom in on locus 1 x3 CRISPR array Location: 106456-106616 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 106456-106616 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 106456-106616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWQ01000003.1 Clostridioides difficile strain GZ13 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 226837 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32581-32675 bp Zoom in on locus 1 x2 CRISPR array Location: 32581-32675 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 32581-32675 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32581-32675 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWQ01000004.1 Clostridioides difficile strain GZ13 Scaffold4_1, whole genome shotgun sequence

⇒Summary: seq-len = 218975 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54303-54723 bp Zoom in on locus 1 x7 CRISPR array Location: 54303-54723 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 54303-54723 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54303-54723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWQ01000007.1 Clostridioides difficile strain GZ13 Scaffold7_1, whole genome shotgun sequence

⇒Summary: seq-len = 184269 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2925-3545 bp 2 Locus 2: 94394-97449 bp Zoom in on locus 1 x10 Zoom in on locus 2 x4 x3 CRISPR array Location: 2925-3545 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2925-3545 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 94394-94621 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 94394-94621 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 97288-97449 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 97288-97449 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2925-3545 bp]: array | spacers
           [Locus range 94394-94621 bp]: array | spacers
           [Locus range 97288-97449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWQ01000001.1 Clostridioides difficile strain GZ13 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 414312 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190345-201303 bp 2 Locus 2: 252513-262236 bp 3 Locus 3: 342020-342245 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 190345-190851 bp Gene: unk Type: unknown Location: 191010-191678 bp Gene: unk Type: unknown Location: 192091-192597 bp Gene: cd06127:DEDDh Type: Type-I Location: 192969-194006 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 200818-201303 bp Gene: cd09641:cas3HD Type: Type-I Location: 252513-254921 bp Gene: cd09693:cas5 Type: Type-I Location: 254948-255745 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255761-256774 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 256794-258260 bp Gene: pfam01881:cas6 Type: other Location: 258265-259002 bp Gene: unk Type: unknown Location: 259316-259774 bp Gene: cas14:cas14 Type: Type-V Location: 259802-260974 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 261127-262236 bp CRISPR array Location: 342020-342245 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 342020-342245 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 342020-342245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)