CRISPRone

CRISPRone report for GCA_003327065.1_ASM332706v1

♦ Seq 1: QNWP01000002.1 Clostridioides difficile strain GZ12 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 425697 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183298-183392 bp Zoom in on locus 1 x2 CRISPR array Location: 183298-183392 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 183298-183392 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 183298-183392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWP01000004.1 Clostridioides difficile strain GZ12 Scaffold4_1, whole genome shotgun sequence

⇒Summary: seq-len = 174530 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3036-3656 bp 2 Locus 2: 94505-97560 bp Zoom in on locus 1 x10 Zoom in on locus 2 x4 x3 CRISPR array Location: 3036-3656 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3036-3656 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 94505-94732 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 94505-94732 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 97399-97560 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 97399-97560 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3036-3656 bp]: array | spacers
           [Locus range 94505-94732 bp]: array | spacers
           [Locus range 97399-97560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWP01000014.1 Clostridioides difficile strain GZ12 Scaffold13_1, whole genome shotgun sequence

⇒Summary: seq-len = 107768 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53047-53466 bp Zoom in on locus 1 x7 CRISPR array Location: 53047-53466 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 53047-53466 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53047-53466 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWP01000001.1 Clostridioides difficile strain GZ12 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 440094 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97990-98151 bp 2 Locus 2: 177937-187660 bp 3 Locus 3: 238870-249828 bp Zoom in on locus 1 x3 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97990-98151 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 97990-98151 bp Num of repeats: 3 Spacers: s1-s2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177937-179046 bp Gene: cas14:cas14 Type: Type-V Location: 179199-180371 bp Gene: unk Type: unknown Location: 180399-180857 bp Gene: pfam01881:cas6 Type: other Location: 181171-181908 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181913-183379 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183399-184412 bp Gene: cd09693:cas5 Type: Type-I Location: 184428-185225 bp Gene: cd09641:cas3HD Type: Type-I Location: 185252-187660 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238870-239355 bp Gene: cd06127:DEDDh Type: Type-I Location: 246158-247204 bp Gene: unk Type: unknown Location: 247576-248082 bp Gene: unk Type: unknown Location: 248495-249163 bp Gene: cd06127:DEDDh Type: Type-I Location: 249322-249828 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97990-98151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWP01000011.1 Clostridioides difficile strain GZ12 Scaffold10_1, whole genome shotgun sequence

⇒Summary: seq-len = 135488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29124-29285 bp Zoom in on locus 1 x3 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29124-29285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)