CRISPRone

CRISPRone report for GCA_003327105.1_ASM332710v1

♦ Seq 1: QNWW01000048.1 Clostridioides difficile strain ZR65 Scaffold45_1, whole genome shotgun sequence

⇒Summary: seq-len = 24482 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-85 bp Zoom in on locus 1 x2 CRISPR array Location: 0-85 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-85 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-85 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWW01000007.1 Clostridioides difficile strain ZR65 Scaffold7_1, whole genome shotgun sequence

⇒Summary: seq-len = 156143 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86774-89828 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 86774-86934 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86774-86934 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 89602-89828 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 89602-89828 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86774-86934 bp]: array | spacers
           [Locus range 89602-89828 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWW01000002.1 Clostridioides difficile strain ZR65 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 205358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11150-11244 bp Zoom in on locus 1 x2 CRISPR array Location: 11150-11244 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11150-11244 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11150-11244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWW01000003.1 Clostridioides difficile strain ZR65 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 167180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2556-2976 bp Zoom in on locus 1 x7 CRISPR array Location: 2556-2976 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2556-2976 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2556-2976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWW01000001.1 Clostridioides difficile strain ZR65 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 319422 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95409-106367 bp 2 Locus 2: 157577-167300 bp 3 Locus 3: 247087-247312 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95409-95915 bp Gene: unk Type: unknown Location: 96074-96742 bp Gene: unk Type: unknown Location: 97155-97661 bp Gene: cd06127:DEDDh Type: Type-I Location: 98033-99070 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105882-106367 bp Gene: cd09641:cas3HD Type: Type-I Location: 157577-159985 bp Gene: cd09693:cas5 Type: Type-I Location: 160012-160809 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160825-161838 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161858-163324 bp Gene: pfam01881:cas6 Type: other Location: 163329-164066 bp Gene: unk Type: unknown Location: 164380-164838 bp Gene: cas14:cas14 Type: Type-V Location: 164866-166038 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166191-167300 bp CRISPR array Location: 247087-247312 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247087-247312 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247087-247312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QNWW01000040.1 Clostridioides difficile strain ZR65 Scaffold37_1, whole genome shotgun sequence

⇒Summary: seq-len = 35124 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29015-29176 bp Zoom in on locus 1 x3 CRISPR array Location: 29015-29176 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29015-29176 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29015-29176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)