CRISPRone

CRISPRone report for GCA_003327145.1_ASM332714v1

♦ Seq 1: QNWV01000001.1 Clostridioides difficile strain ZR58 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 374077 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182379-182473 bp Zoom in on locus 1 x2 CRISPR array Location: 182379-182473 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182379-182473 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182379-182473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWV01000005.1 Clostridioides difficile strain ZR58 Scaffold5_1, whole genome shotgun sequence

⇒Summary: seq-len = 267855 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82255-102183 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 82255-84213 bp Gene: pfam00078:RT Type: other Location: 89359-91191 bp Gene: pfam00078:RT Type: other Location: 100387-102183 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWV01000003.1 Clostridioides difficile strain ZR58 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 320660 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29995-30156 bp 2 Locus 2: 139415-140035 bp 3 Locus 3: 230884-233939 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 29995-30156 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29995-30156 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 139415-140035 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 139415-140035 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 230884-231111 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 230884-231111 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 233778-233939 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 233778-233939 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29995-30156 bp]: array | spacers
           [Locus range 139415-140035 bp]: array | spacers
           [Locus range 230884-231111 bp]: array | spacers
           [Locus range 233778-233939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWV01000018.1 Clostridioides difficile strain ZR58 Scaffold17_1, whole genome shotgun sequence

⇒Summary: seq-len = 107803 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53082-53501 bp Zoom in on locus 1 x7 CRISPR array Location: 53082-53501 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 53082-53501 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53082-53501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWV01000002.1 Clostridioides difficile strain ZR58 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 345301 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95433-106391 bp 2 Locus 2: 157601-167324 bp 3 Locus 3: 247111-247336 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95433-95939 bp Gene: unk Type: unknown Location: 96098-96766 bp Gene: unk Type: unknown Location: 97179-97685 bp Gene: cd06127:DEDDh Type: Type-I Location: 98057-99094 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105906-106391 bp Gene: cd09641:cas3HD Type: Type-I Location: 157601-160009 bp Gene: cd09693:cas5 Type: Type-I Location: 160036-160833 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160849-161862 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161882-163348 bp Gene: pfam01881:cas6 Type: other Location: 163353-164090 bp Gene: unk Type: unknown Location: 164404-164862 bp Gene: cas14:cas14 Type: Type-V Location: 164890-166062 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166215-167324 bp CRISPR array Location: 247111-247336 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247111-247336 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247111-247336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)