CRISPRone

CRISPRone report for GCA_003327205.1_ASM332720v1

♦ Seq 1: QOBZ01000053.1 Clostridioides difficile strain ZR73 Scaffold50_1, whole genome shotgun sequence

⇒Summary: seq-len = 27977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24385-25004 bp Zoom in on locus 1 x10 CRISPR array Location: 24385-25004 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 24385-25004 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24385-25004 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QOBZ01000025.1 Clostridioides difficile strain ZR73 Scaffold23_1, whole genome shotgun sequence

⇒Summary: seq-len = 51459 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19555-29278 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19555-21963 bp Gene: cd09693:cas5 Type: Type-I Location: 21990-22787 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22803-23816 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23836-25302 bp Gene: pfam01881:cas6 Type: other Location: 25307-26044 bp Gene: unk Type: unknown Location: 26358-26816 bp Gene: cas14:cas14 Type: Type-V Location: 26844-28016 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 28169-29278 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QOBZ01000001.1 Clostridioides difficile strain ZR73 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 195661 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191069-191164 bp Zoom in on locus 1 x2 CRISPR array Location: 191069-191164 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 191069-191164 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 191069-191164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QOBZ01000010.1 Clostridioides difficile strain ZR73 Scaffold10_1, whole genome shotgun sequence

⇒Summary: seq-len = 62982 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8562-8787 bp Zoom in on locus 1 x4 CRISPR array Location: 8562-8787 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8562-8787 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8562-8787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QOBZ01000116.1 Clostridioides difficile strain ZR73 Scaffold113_1, whole genome shotgun sequence

⇒Summary: seq-len = 9488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2584-3004 bp Zoom in on locus 1 x7 CRISPR array Location: 2584-3004 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2584-3004 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2584-3004 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QOBZ01000043.1 Clostridioides difficile strain ZR73 Scaffold40_1, whole genome shotgun sequence

⇒Summary: seq-len = 35121 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5846-6006 bp Zoom in on locus 1 x3 CRISPR array Location: 5846-6006 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5846-6006 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5846-6006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: QOBZ01000058.1 Clostridioides difficile strain ZR73 Scaffold55_1, whole genome shotgun sequence

⇒Summary: seq-len = 26264 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22569-25623 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 22569-22729 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 22569-22729 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 25397-25623 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 25397-25623 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22569-22729 bp]: array | spacers
           [Locus range 25397-25623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)