CRISPRone

CRISPRone report for GCA_003327215.1_ASM332721v1

♦ Seq 1: QNWY01000001.1 Clostridioides difficile strain ZR72 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 388298 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182160-193118 bp 2 Locus 2: 244328-254051 bp 3 Locus 3: 333838-334063 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 182160-182666 bp Gene: unk Type: unknown Location: 182825-183493 bp Gene: unk Type: unknown Location: 183906-184412 bp Gene: cd06127:DEDDh Type: Type-I Location: 184784-185821 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 192633-193118 bp Gene: cd09641:cas3HD Type: Type-I Location: 244328-246736 bp Gene: cd09693:cas5 Type: Type-I Location: 246763-247560 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247576-248589 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248609-250075 bp Gene: pfam01881:cas6 Type: other Location: 250080-250817 bp Gene: unk Type: unknown Location: 251131-251589 bp Gene: cas14:cas14 Type: Type-V Location: 251617-252789 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 252942-254051 bp CRISPR array Location: 333838-334063 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 333838-334063 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 333838-334063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWY01000019.1 Clostridioides difficile strain ZR72 Scaffold18_1, whole genome shotgun sequence

⇒Summary: seq-len = 92848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63565-63725 bp Zoom in on locus 1 x3 CRISPR array Location: 63565-63725 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 63565-63725 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63565-63725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWY01000008.1 Clostridioides difficile strain ZR72 Scaffold8_1, whole genome shotgun sequence

⇒Summary: seq-len = 156557 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86962-90016 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 86962-87122 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86962-87122 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 89790-90016 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 89790-90016 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86962-87122 bp]: array | spacers
           [Locus range 89790-90016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWY01000002.1 Clostridioides difficile strain ZR72 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 377664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194163-194258 bp Zoom in on locus 1 x2 CRISPR array Location: 194163-194258 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194163-194258 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194163-194258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWY01000021.1 Clostridioides difficile strain ZR72 Scaffold20_1, whole genome shotgun sequence

⇒Summary: seq-len = 70644 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24421-25040 bp Zoom in on locus 1 x10 CRISPR array Location: 24421-25040 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 24421-25040 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24421-25040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QNWY01000020.1 Clostridioides difficile strain ZR72 Scaffold19_1, whole genome shotgun sequence

⇒Summary: seq-len = 72650 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19207-19627 bp Zoom in on locus 1 x7 CRISPR array Location: 19207-19627 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19207-19627 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19207-19627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)