CRISPRone

CRISPRone report for GCA_003327245.1_ASM332724v1

♦ Seq 1: QNWZ01000052.1 Clostridioides difficile strain ZR9 Scaffold51_1, whole genome shotgun sequence

⇒Summary: seq-len = 26075 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19152-19572 bp Zoom in on locus 1 x7 CRISPR array Location: 19152-19572 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19152-19572 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19152-19572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWZ01000049.1 Clostridioides difficile strain ZR9 Scaffold48_1, whole genome shotgun sequence

⇒Summary: seq-len = 27912 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2916-3536 bp Zoom in on locus 1 x10 CRISPR array Location: 2916-3536 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2916-3536 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2916-3536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWZ01000008.1 Clostridioides difficile strain ZR9 Scaffold8_1, whole genome shotgun sequence

⇒Summary: seq-len = 123177 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43251-46306 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 43251-43478 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 43251-43478 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 46145-46306 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 46145-46306 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43251-43478 bp]: array | spacers
           [Locus range 46145-46306 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWZ01000001.1 Clostridioides difficile strain ZR9 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 211655 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3508-14466 bp 2 Locus 2: 65676-75399 bp 3 Locus 3: 155186-155411 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 3508-4014 bp Gene: unk Type: unknown Location: 4173-4841 bp Gene: unk Type: unknown Location: 5254-5760 bp Gene: cd06127:DEDDh Type: Type-I Location: 6132-7169 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 13981-14466 bp Gene: cd09641:cas3HD Type: Type-I Location: 65676-68084 bp Gene: cd09693:cas5 Type: Type-I Location: 68111-68908 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 68924-69937 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 69957-71423 bp Gene: pfam01881:cas6 Type: other Location: 71428-72165 bp Gene: unk Type: unknown Location: 72479-72937 bp Gene: cas14:cas14 Type: Type-V Location: 72965-74137 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 74290-75399 bp CRISPR array Location: 155186-155411 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 155186-155411 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 155186-155411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWZ01000037.1 Clostridioides difficile strain ZR9 Scaffold36_1, whole genome shotgun sequence

⇒Summary: seq-len = 35247 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29124-29285 bp Zoom in on locus 1 x3 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29124-29285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QNWZ01000017.1 Clostridioides difficile strain ZR9 Scaffold17_1, whole genome shotgun sequence

⇒Summary: seq-len = 76237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30145-30239 bp Zoom in on locus 1 x2 CRISPR array Location: 30145-30239 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 30145-30239 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30145-30239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)