CRISPRone

CRISPRone report for GCA_003327325.1_ASM332732v1

♦ Seq 1: QNWB01000002.1 Clostridioides difficile strain GZ3 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 520883 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 156008-156427 bp 2 Locus 2: 287817-290871 bp 3 Locus 3: 381721-382340 bp 4 Locus 4: 491600-491760 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 156008-156427 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 156008-156427 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 287817-287977 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 287817-287977 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 290645-290871 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 290645-290871 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 381721-382340 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 381721-382340 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 491600-491760 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 491600-491760 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 156008-156427 bp]: array | spacers
           [Locus range 287817-287977 bp]: array | spacers
           [Locus range 290645-290871 bp]: array | spacers
           [Locus range 381721-382340 bp]: array | spacers
           [Locus range 491600-491760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWB01000001.1 Clostridioides difficile strain GZ3 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 610490 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97990-98216 bp 2 Locus 2: 178002-187725 bp 3 Locus 3: 238935-249893 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97990-98216 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97990-98216 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178002-179111 bp Gene: cas14:cas14 Type: Type-V Location: 179264-180436 bp Gene: unk Type: unknown Location: 180464-180922 bp Gene: pfam01881:cas6 Type: other Location: 181236-181973 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181978-183444 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183464-184477 bp Gene: cd09693:cas5 Type: Type-I Location: 184493-185290 bp Gene: cd09641:cas3HD Type: Type-I Location: 185317-187725 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238935-239420 bp Gene: cd06127:DEDDh Type: Type-I Location: 246223-247269 bp Gene: unk Type: unknown Location: 247641-248147 bp Gene: unk Type: unknown Location: 248560-249228 bp Gene: cd06127:DEDDh Type: Type-I Location: 249387-249893 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97990-98216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)