CRISPRone

CRISPRone report for GCA_003327345.1_ASM332734v1

♦ Seq 1: QNWE01000002.1 Clostridioides difficile strain ZR66 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 374166 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191629-191724 bp Zoom in on locus 1 x2 CRISPR array Location: 191629-191724 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 191629-191724 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 191629-191724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWE01000005.1 Clostridioides difficile strain ZR66 Scaffold5_1, whole genome shotgun sequence

⇒Summary: seq-len = 218975 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164254-164673 bp Zoom in on locus 1 x7 CRISPR array Location: 164254-164673 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164254-164673 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164254-164673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWE01000003.1 Clostridioides difficile strain ZR66 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 284716 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86822-89876 bp 2 Locus 2: 180726-181345 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 CRISPR array Location: 86822-86982 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86822-86982 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 89650-89876 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 89650-89876 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 180726-181345 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 180726-181345 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86822-86982 bp]: array | spacers
           [Locus range 89650-89876 bp]: array | spacers
           [Locus range 180726-181345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWE01000001.1 Clostridioides difficile strain ZR66 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 414311 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190332-201290 bp 2 Locus 2: 252500-262223 bp 3 Locus 3: 342010-342235 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 190332-190838 bp Gene: unk Type: unknown Location: 190997-191665 bp Gene: unk Type: unknown Location: 192078-192584 bp Gene: cd06127:DEDDh Type: Type-I Location: 192956-193993 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 200805-201290 bp Gene: cd09641:cas3HD Type: Type-I Location: 252500-254908 bp Gene: cd09693:cas5 Type: Type-I Location: 254935-255732 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255748-256761 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 256781-258247 bp Gene: pfam01881:cas6 Type: other Location: 258252-258989 bp Gene: unk Type: unknown Location: 259303-259761 bp Gene: cas14:cas14 Type: Type-V Location: 259789-260961 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 261114-262223 bp CRISPR array Location: 342010-342235 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 342010-342235 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 342010-342235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWE01000031.1 Clostridioides difficile strain ZR66 Scaffold31_1, whole genome shotgun sequence

⇒Summary: seq-len = 35272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29124-29285 bp Zoom in on locus 1 x3 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29124-29285 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29124-29285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QNWE01000006.1 Clostridioides difficile strain ZR66 Scaffold6_1, whole genome shotgun sequence

⇒Summary: seq-len = 218395 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117652-137580 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 117652-119448 bp Gene: pfam00078:RT Type: other Location: 128644-130476 bp Gene: pfam00078:RT Type: other Location: 135622-137580 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)