CRISPRone

CRISPRone report for GCA_003327755.1_ASM332775v1

♦ Seq 1: QNWF01000001.1 Clostridioides difficile strain ZR82 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 224467 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194155-194250 bp Zoom in on locus 1 x2 CRISPR array Location: 194155-194250 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194155-194250 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194155-194250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QNWF01000041.1 Clostridioides difficile strain ZR82 Scaffold41_1, whole genome shotgun sequence

⇒Summary: seq-len = 34099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2495-2915 bp Zoom in on locus 1 x7 CRISPR array Location: 2495-2915 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2495-2915 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2495-2915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QNWF01000002.1 Clostridioides difficile strain ZR82 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 203552 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59633-69356 bp 2 Locus 2: 149143-149368 bp Zoom in on locus 1 Zoom in on locus 2 x4 Gene: cd09641:cas3HD Type: Type-I Location: 59633-62041 bp Gene: cd09693:cas5 Type: Type-I Location: 62068-62865 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62881-63894 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 63914-65380 bp Gene: pfam01881:cas6 Type: other Location: 65385-66122 bp Gene: unk Type: unknown Location: 66436-66894 bp Gene: cas14:cas14 Type: Type-V Location: 66922-68094 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 68247-69356 bp CRISPR array Location: 149143-149368 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 149143-149368 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 149143-149368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QNWF01000024.1 Clostridioides difficile strain ZR82 Scaffold24_1, whole genome shotgun sequence

⇒Summary: seq-len = 58484 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9806-12860 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 9806-9966 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9806-9966 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12634-12860 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 12634-12860 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9806-9966 bp]: array | spacers
           [Locus range 12634-12860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QNWF01000040.1 Clostridioides difficile strain ZR82 Scaffold40_1, whole genome shotgun sequence

⇒Summary: seq-len = 35830 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29790-29951 bp Zoom in on locus 1 x3 CRISPR array Location: 29790-29951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29790-29951 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29790-29951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QNWF01000033.1 Clostridioides difficile strain ZR82 Scaffold33_1, whole genome shotgun sequence

⇒Summary: seq-len = 48881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45212-45831 bp Zoom in on locus 1 x10 CRISPR array Location: 45212-45831 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45212-45831 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45212-45831 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)