CRISPRone

CRISPRone report for GCA_003328455.1_ASM332845v1

♦ Seq 1: QPAA01000004.1 Clostridioides difficile strain 2 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 356302 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164289-164649 bp 2 Locus 2: 336401-337020 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 164289-164649 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 164289-164649 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 336401-337020 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 336401-337020 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164289-164649 bp]: array | spacers
           [Locus range 336401-337020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QPAA01000001.1 Clostridioides difficile strain 2 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 490871 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186015-186110 bp 2 Locus 2: 398728-398889 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 CRISPR array Location: 186015-186110 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 186015-186110 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 398728-398889 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 398728-398889 bp Num of repeats: 3 Spacers: s2-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 186015-186110 bp]: array | spacers
           [Locus range 398728-398889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QPAA01000005.1 Clostridioides difficile strain 2 Scaffold4_1, whole genome shotgun sequence

⇒Summary: seq-len = 345471 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97986-98343 bp 2 Locus 2: 178129-187852 bp 3 Locus 3: 239062-250020 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97986-98343 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97986-98343 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178129-179238 bp Gene: cas14:cas14 Type: Type-V Location: 179391-180563 bp Gene: unk Type: unknown Location: 180591-181049 bp Gene: pfam01881:cas6 Type: other Location: 181363-182100 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182105-183571 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183591-184604 bp Gene: cd09693:cas5 Type: Type-I Location: 184620-185417 bp Gene: cd09641:cas3HD Type: Type-I Location: 185444-187852 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239062-239547 bp Gene: cd06127:DEDDh Type: Type-I Location: 246350-247396 bp Gene: unk Type: unknown Location: 247768-248274 bp Gene: unk Type: unknown Location: 248687-249355 bp Gene: cd06127:DEDDh Type: Type-I Location: 249514-250020 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97986-98343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)