CRISPRone

CRISPRone report for GCA_003332375.1_ASM333237v1

♦ Seq 1: QDGE01000033.1 Pseudomonas aeruginosa strain PA66 contig000033, whole genome shotgun sequence

⇒Summary: seq-len = 46907 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8345-19164 bp Zoom in on locus 1 x8 x19 CRISPR array Location: 8345-8801 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 8345-8801 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 9576-11528 bp Gene: unk Type: unknown Location: 11547-12257 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12260-13828 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 13825-14355 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14365-15507 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15509-16171 bp Gene: pfam08798:cas6e Type: other Location: 16146-16757 bp Gene: cd09719:cas1 Type: universal Location: 16784-17674 bp Gene: pfam09707:cas2 Type: universal Location: 17671-17970 bp CRISPR array Location: 18035-19164 bp Num of repeats: 19 Spacers: s8-s25 CRISPR array Location: 18035-19164 bp Num of repeats: 19 Spacers: s8-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8345-8801 bp]: array | spacers
           [Locus range 18035-19164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)