CRISPRone

CRISPRone report for GCA_003332415.1_ASM333241v1

♦ Seq 1: QDGG01000012.1 Pseudomonas aeruginosa strain PA59 contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 201249 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8421-19179 bp Zoom in on locus 1 x8 x18 CRISPR array Location: 8421-8877 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 8421-8877 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 9652-11604 bp Gene: unk Type: unknown Location: 11623-12333 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12336-13904 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 13901-14431 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14441-15583 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15585-16247 bp Gene: pfam08798:cas6e Type: other Location: 16222-16833 bp Gene: cd09719:cas1 Type: universal Location: 16860-17750 bp Gene: pfam09707:cas2 Type: universal Location: 17747-18046 bp CRISPR array Location: 18111-19179 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 18111-19179 bp Num of repeats: 18 Spacers: s8-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8421-8877 bp]: array | spacers
           [Locus range 18111-19179 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)