CRISPRone

CRISPRone report for GCA_003332485.1_ASM333248v1

♦ Seq 1: QDGD01000011.1 Pseudomonas aeruginosa strain PA86 contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 201324 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182072-192890 bp Zoom in on locus 1 x19 x8 CRISPR array Location: 182072-183200 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 182072-183200 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam09707:cas2 Type: universal Location: 183265-183564 bp Gene: cd09719:cas1 Type: universal Location: 183561-184451 bp Gene: pfam08798:cas6e Type: other Location: 184478-185017 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 185064-185726 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 185728-186870 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 186880-187410 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 187407-188975 bp Gene: unk Type: unknown Location: 188978-189688 bp Gene: cd09641:cas3HD Type: Type-I Location: 189707-191659 bp CRISPR array Location: 192435-192890 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 192435-192890 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182072-183200 bp]: array | spacers
           [Locus range 192435-192890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)