CRISPRone

CRISPRone report for GCA_003332525.1_ASM333252v1

♦ Seq 1: QDGS01000028.1 Pseudomonas aeruginosa strain PA57 contig000028, whole genome shotgun sequence

⇒Summary: seq-len = 69114 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37417-47379 bp Zoom in on locus 1 x17 x7 CRISPR array Location: 37417-38405 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37417-38405 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38588-39151 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39155-40183 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40194-41177 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41164-42468 bp Gene: COG1203:cas3 Type: Type-I Location: 42526-45756 bp Gene: cd09718:cas1 Type: universal Location: 45753-46727 bp CRISPR array Location: 46992-47379 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 46992-47379 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37417-38405 bp]: array | spacers
           [Locus range 46992-47379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QDGS01000013.1 Pseudomonas aeruginosa strain PA57 contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 189563 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122494-123122 bp Zoom in on locus 1 x11 CRISPR array Location: 122494-123122 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 122494-123122 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122494-123122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QDGS01000018.1 Pseudomonas aeruginosa strain PA57 contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 119164 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100367-100815 bp Zoom in on locus 1 x8 CRISPR array Location: 100367-100815 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 100367-100815 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100367-100815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QDGS01000002.1 Pseudomonas aeruginosa strain PA57 contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 387517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207551-208839 bp Zoom in on locus 1 x22 CRISPR array Location: 207551-208839 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 207551-208839 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207551-208839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)