CRISPRone

CRISPRone report for GCA_003332535.1_ASM333253v1

♦ Seq 1: QDGV01000002.1 Pseudomonas aeruginosa strain PA100 contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 718815 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5871-16690 bp Zoom in on locus 1 x7 x2 x17 CRISPR array Location: 5871-6267 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5871-6267 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6361-6451 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 6361-6451 bp Num of repeats: 2 Spacers: s7-s7 Gene: cd09641:cas3HD Type: Type-I Location: 7225-9906 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 9909-11477 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 11474-12004 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 12014-13156 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 13158-13820 bp Gene: pfam08798:cas6e Type: other Location: 13795-14406 bp Gene: cd09719:cas1 Type: universal Location: 14433-15323 bp Gene: pfam09707:cas2 Type: universal Location: 15320-15619 bp CRISPR array Location: 15684-16690 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 15684-16690 bp Num of repeats: 17 Spacers: s8-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5871-6267 bp]: array | spacers
           [Locus range 6361-6451 bp]: array | spacers
           [Locus range 15684-16690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QDGV01000022.1 Pseudomonas aeruginosa strain PA100 contig000022, whole genome shotgun sequence

⇒Summary: seq-len = 47728 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37569-47338 bp Zoom in on locus 1 x8 x7 CRISPR array Location: 37569-38018 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 37569-38018 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 38201-38764 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38768-39796 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39807-40790 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40777-42078 bp Gene: COG1203:cas3 Type: Type-I Location: 42489-45719 bp Gene: cd09718:cas1 Type: universal Location: 45716-46690 bp CRISPR array Location: 46951-47338 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 46951-47338 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37569-38018 bp]: array | spacers
           [Locus range 46951-47338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QDGV01000008.1 Pseudomonas aeruginosa strain PA100 contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 415988 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 839-1707 bp Zoom in on locus 1 x15 CRISPR array Location: 839-1707 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 839-1707 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 839-1707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)