CRISPRone

CRISPRone report for GCA_003332575.1_ASM333257v1

♦ Seq 1: QDGK01000030.1 Pseudomonas aeruginosa strain PA157 contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 48637 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38296-48496 bp Zoom in on locus 1 x9 x19 CRISPR array Location: 38296-38805 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38296-38805 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 38989-39552 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39556-40584 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40595-41578 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41565-42869 bp Gene: COG1203:cas3 Type: Type-I Location: 42927-46157 bp Gene: cd09718:cas1 Type: universal Location: 46154-47128 bp CRISPR array Location: 47389-48496 bp Num of repeats: 19 Spacers: s9-s26 CRISPR array Location: 47389-48496 bp Num of repeats: 19 Spacers: s9-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38296-38805 bp]: array | spacers
           [Locus range 47389-48496 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QDGK01000005.1 Pseudomonas aeruginosa strain PA157 contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 416658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415211-415898 bp Zoom in on locus 1 x12 CRISPR array Location: 415211-415898 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 415211-415898 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415211-415898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)