CRISPRone

CRISPRone report for GCA_003332795.1_ASM333279v1

♦ Seq 1: QDGR01000001.1 Pseudomonas aeruginosa strain PA17 contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 892858 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 484839-486068 bp Zoom in on locus 1 x21 CRISPR array Location: 484839-486068 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 484839-486068 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 484839-486068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QDGR01000027.1 Pseudomonas aeruginosa strain PA17 contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 79135 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31644-41602 bp Zoom in on locus 1 x12 x12 CRISPR array Location: 31644-32332 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 31644-32332 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 32592-33566 bp Gene: COG1203:cas3 Type: Type-I Location: 33563-36793 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 36851-38155 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38142-39125 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39136-40164 bp Gene: cd09739:cas6f Type: other Location: 40168-40731 bp CRISPR array Location: 40915-41602 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 40915-41602 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31644-32332 bp]: array | spacers
           [Locus range 40915-41602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)