CRISPRone

CRISPRone report for GCA_003397445.1_ASM339744v1

♦ Seq 1: QFTF01000068.1 Pseudomonas aeruginosa strain AUH-PA28 scaffold_67, whole genome shotgun sequence

⇒Summary: seq-len = 8358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7066-7993 bp Zoom in on locus 1 x16 CRISPR array Location: 7066-7993 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 7066-7993 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7066-7993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QFTF01000022.1 Pseudomonas aeruginosa strain AUH-PA28 scaffold_21, whole genome shotgun sequence

⇒Summary: seq-len = 120275 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98313-106574 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98313-99923 bp Gene: pfam13280:WYL Type: other Location: 100084-101100 bp Gene: COG2378:WYL Type: other Location: 101842-102684 bp Gene: unk Type: unknown Location: 102815-103102 bp Gene: unk Type: unknown Location: 103237-103815 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104208-106574 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QFTF01000043.1 Pseudomonas aeruginosa strain AUH-PA28 scaffold_42, whole genome shotgun sequence

⇒Summary: seq-len = 50192 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38251-49829 bp Zoom in on locus 1 x23 x28 CRISPR array Location: 38251-39596 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38251-39596 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39780-40343 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40347-41375 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41386-42369 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42356-43660 bp Gene: COG1203:cas3 Type: Type-I Location: 43718-46948 bp Gene: cd09718:cas1 Type: universal Location: 46945-47919 bp CRISPR array Location: 48181-49829 bp Num of repeats: 28 Spacers: s23-s49 CRISPR array Location: 48181-49829 bp Num of repeats: 28 Spacers: s23-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38251-39596 bp]: array | spacers
           [Locus range 48181-49829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)